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This training is provided by ECDC as part of the GenEpi-BioTrain programme and is delivered by the Institut Pasteur. It is open for enrolment for anyone interested in learning more about Nanopore sequencing technology.

Why attending this training ?

The webinar will provide participants with a comprehensive understanding of Nanopore sequencing technology, from its underlying principles to its practical applications in epidemiological surveillance of infectious diseases. It will enable participants to explore the latest advancements in Nanopore technology, to develop key bioinformatics skills for analysing Nanopore sequencing data and to understand its diverse applications in fields such as virology and bacteriology. A particular focus will be given on applications to the surveillance and outbreak investigation of pathogens.

Upon completing this workshop, participants will be able to:

• Understand the basic principles of Nanopore sequencing;
• Discuss the latest advancements in Nanopore technology;
• Perform bioinformatics analyses using Nanopore data;
• Apply Nanopore sequencing in various areas;
• Recognize the strengths and limitations of Nanopore sequencing

Who is the training for?

The training is intended for beginners in bioinformatics and for everyone interested in Nanopore sequencing technology. 
It is preferable that participants are familiar with Unix terminals, bioinformatic command line tools and Conda virtual environments.

How long is the training?

Two live sessions will take place on Wednesday 9 and Friday 11 April, both from 09:30 to 12:00.

• Session 1: Introduction to Nanopore: Principles, Updates, and Bioinformatics
• Session 2: Applications to Virology, Bacteriology, and Mycology

Will the webinar be recorded?

Yes, when you enrol in the training, you will also get access to the recordings after the live sessions. 

Can I get a certificate?

To get a certificate of completion, you need to attend at least one live session and to watch the recording of the other session you were not able to attend.

What are the requirements for the practical exercises?

Prerequisites 

To meet the learning objectives of the practical exercises, participants need to:

• be able to navigate a Unix terminal and use bioinformatic command line tools;
• have access to a Unix terminal (or emulator).

However, participants who do not have those skills can participate as observers.

Software requirement

For the practical exercises, participants need to install the following software: Flye, Busco, quast and Nanoplot. More information on how to install them is available on the course page after you’ve enrolled.

How can I enrol?

You can access the webinar for free, thanks to EU funding.

Log in to the Learning Portal and enrol in the course.