Data
In this folder you will find the data to go through the exercise.
Here is the description of the different folders and files:
a) subfolders:
- Mammal_seq: folder containing 5 fasta files with the consensus sequences of the mammalian cases.
- Genotype_ref_seq: folder containing 4 fasta files with consensus sequences for 4 identified HPAIV genotypes. The folder contains also an excel file with a schematic representation of the different segment combinations that define the genotypes.
- aln: folder containing fasta files for each segment excluding the mammalian cases and genotypes
- Trees: folder with the trees already generated and in pdf format. (use this as your last resource for answering some of the questions. Ideally you should make the phylogeny yourself with the sequences that we provided)- Fastq: folder containing the fastq files to use on IRMA.