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  3. Virtual training 5: Bacterial genome assembly and QC
  4. Session 1 (4 December)
  5. Sequencing data and result files

GenEpi-BioTrain - Virtual training 05: Bacterial genome assembly and quality control

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Sequencing data and result files

    • demo_assemblies.zipdemo_assemblies.zip
    • Ec001_nanopore.fastq.gzEc001_nanopore.fastq.gz
    • Ec001.illumina_R1.trimmed.fastq.gzEc001.illumina_R1.trimmed.fastq.gz
    • Ec001.illumina_R2.trimmed.fastq.gzEc001.illumina_R2.trimmed.fastq.gz
    • quast_report_Illumina.htmlquast_report_Illumina.html
    • quast_report_spades_unicycler.htmlquast_report_spades_unicycler.html
    • quast_results_Illumina.zipquast_results_Illumina.zip
    • quast_results_spades_unicycler.zipquast_results_spades_unicycler.zip
    • spades_assemblies.zipspades_assemblies.zip
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GenEpi-BioTrain - Virtual training 05: Bacterial genome assembly and quality control

  • Participants

  • Bacterial genome assembly and quality control (Gen...

  • Aim and Objectives

  • Delivery

  • Software requirements

  • Session 1 (4 December)

    • FolderPresentations

    • FolderSequencing data and result files

    • FolderResources

    • URLGitHub - ablab/spades: SPAdes Genome Assembler

    • URLGitHub - rrwick/Unicycler: hybrid assembly pipelin...

  • Session 2 (7 December)

  • Contacts

 European Centre for Disease Prevention and Control (ECDC) 2025
 courses@ecdc.europa.eu
 https://ecdc.europa.eu
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