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  3. GenEpi Bio -Virtual training 2: From sequencer to polished reads for bacteria
  4. Session 1 (12 September): Introduction to and execution of QC assessment and contamination control
  5. Sequencing data

GenEpi-BioTrain - Virtual training 02: From sequencer to polished reads for bacteria

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Sequencing data

    • illuminaillumina
      • Ec001.illumina_R1.fastq.gzEc001.illumina_R1.fastq.gz
      • Ec001.illumina_R2.fastq.gzEc001.illumina_R2.fastq.gz
      • Ec002.illumina_R1.fastq.gzEc002.illumina_R1.fastq.gz
      • Ec002.illumina_R2.fastq.gzEc002.illumina_R2.fastq.gz
      • Ec003.illumina_R1.fastq.gzEc003.illumina_R1.fastq.gz
      • Ec003.illumina_R2.fastq.gzEc003.illumina_R2.fastq.gz
      • Ec004.illumina_R1.fastq.gzEc004.illumina_R1.fastq.gz
      • Ec004.illumina_R2.fastq.gzEc004.illumina_R2.fastq.gz
      • Ec005.illumina_R1.fastq.gzEc005.illumina_R1.fastq.gz
      • Ec005.illumina_R2.fastq.gzEc005.illumina_R2.fastq.gz
    • nanoporenanopore
      • Ec001_super.fastq.gzEc001_super.fastq.gz
      • Ec002_super.fastq.gzEc002_super.fastq.gz
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Skip GenEpi-BioTrain - Virtual training 02: From sequencer to polished reads for bacteria

GenEpi-BioTrain - Virtual training 02: From sequencer to polished reads for bacteria

  • Participants

  • From sequencer to polished reads for bacteria (Gen...

  • Aim and Objectives

  • Delivery

  • Software requirements

  • Session 1 (12 September): Introduction to and exec...

    • FileSeq2Preb-published

    • FolderSequencing data

    • FilePart 1 - Illumina quality assessment

    • FilePart 2 - Nanopore quality control

  • Session 2 (14 September): Interpretation of QC and...

  • Contacts

 European Centre for Disease Prevention and Control (ECDC) 2025
 courses@ecdc.europa.eu
 https://ecdc.europa.eu
ECDC-Logo_1c_neg_en_FAB2.png