name: env_BTG_covid_assembly
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - bcftools=1.14=hde04aa1_1
  - biopython=1.79=py36h8f6f2f9_0
  - bwa=0.7.17=h7132678_9
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2022.9.24=ha878542_0
  - cutadapt=3.5=py36h91eb985_1
  - dataclasses=0.8=pyh787bdff_2
  - dnaio=0.6.0=py36hc5360cc_0
  - expat=2.4.8=h27087fc_0
  - fastqc=0.11.9=hdfd78af_1
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - fontconfig=2.14.0=h8e229c2_0
  - freetype=2.12.1=hca18f0e_0
  - gsl=2.7=he838d99_0
  - htslib=1.14=h9753748_2
  - isa-l=2.30.0=ha770c72_4
  - ivar=1.3.1=hecb563c_3
  - keyutils=1.6.1=h166bdaf_0
  - krb5=1.19.3=h3790be6_0
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - libblas=3.9.0=16_linux64_openblas
  - libcblas=3.9.0=16_linux64_openblas
  - libcurl=7.83.1=h7bff187_0
  - libdeflate=1.10=h7f98852_0
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libffi=3.3=h58526e2_2
  - libgcc-ng=12.1.0=h8d9b700_16
  - libgfortran-ng=12.1.0=h69a702a_16
  - libgfortran5=12.1.0=hdcd56e2_16
  - libgomp=12.1.0=h8d9b700_16
  - liblapack=3.9.0=16_linux64_openblas
  - libnghttp2=1.47.0=hdcd2b5c_1
  - libnsl=2.0.0=h7f98852_0
  - libopenblas=0.3.21=pthreads_h78a6416_0
  - libpng=1.6.37=h753d276_4
  - libssh2=1.10.0=haa6b8db_3
  - libstdcxx-ng=12.1.0=ha89aaad_16
  - libuuid=2.32.1=h7f98852_1000
  - libzlib=1.2.12=h166bdaf_2
  - ncurses=6.2=h58526e2_4
  - nextclade=2.13.1=h9ee0642_0
  - numpy=1.19.5=py36hfc0c790_2
  - openjdk=11.0.1=h516909a_1016
  - openssl=1.1.1s=h166bdaf_0
  - pbzip2=1.1.13=0
  - perl=5.32.1=2_h7f98852_perl5
  - pigz=2.6=h27826a3_0
  - pip=21.3.1=pyhd8ed1ab_0
  - python=3.6.12=hffdb5ce_0_cpython
  - python-isal=0.11.1=py36h8f6f2f9_0
  - python_abi=3.6=2_cp36m
  - pyyaml=5.3.1=py36h8f6f2f9_2
  - readline=8.1=h46c0cb4_0
  - samtools=1.14=hb421002_0
  - setuptools=58.0.4=py36h5fab9bb_2
  - sqlite=3.37.0=h9cd32fc_0
  - tk=8.6.12=h27826a3_0
  - trim-galore=0.6.5=0
  - wheel=0.37.1=pyhd8ed1ab_0
  - xopen=1.2.0=py36h5fab9bb_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - zlib=1.2.12=h166bdaf_2
prefix: /srv/data/tools/anaconda3/envs/env_BTG_covid_assembly